Hannah Verdonk | Observable

Hannah Verdonk

Passionate about biology, computers, and the intersection of the two.

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MSS codon genetic algorithm performance

Apr 17• 3

Visualizing SYNREV model fits and rate distributions for Drosophila subsets

Mar 20• 1

Factor analysis mean loadings

Jan 24

Visualizing SYNREV model fits and rate distributions.

Apr 25

Enterobacteriaceae cluster comparison

Dec 4

Visualizing Enterobacteriaceae SYNREV model fits and rate distributions.

Jan 9

Dimensionality Reduction

Nov 2, 2023

BUSTED vs BUSTED-E

Oct 23, 2023

GA performance on Drosophila pre- and post-GA update

Aug 23, 2023

Plotting MSS GA model selection results

Aug 18, 2023

Make quick plots

Jul 14, 2023

Plotting MSS (amino-acid) GA model selection results

Aug 18, 2023

Visualizing MSS model results for Enterobacteriaceae genes

Jun 17, 2023

Visualizing MSS model results for Enterobacterales genes

Sep 19, 2023

Covariatiates with codon bias for codons assigned to different rate classes

Oct 4, 2023

MSS genetic algorithm performance

Dec 1, 2022

Visualizing MSS model results

Dec 1, 2022

Visualizing MSS model results for Drosophila genes

Dec 3, 2022• 1

SYNREV-Codon: Drosophila

Mar 8, 2023

PREI Evolutionary imputation validation:

May 9, 2022